Get Started
Quick setup, quicker research - it's only (bio) logical.
Use the instructions below to set up your system for running your favorite simulators
- Find Simulation ToolsFind tools that can run specific simulations and download and run them.
- Run SimulationsRun a broad range of modeling frameworks, simulation algorithms, and model formats.
- Compare Simulation ToolsCompare simulation tools to identify the strengths of different approaches, find bugs, and drive standardization.
Select Installation Method
Run a simulator using Python from the CLI:
for a comprehensive guide and best practices.
- Install the BioSimulator you want with pip. Here we will use biosimulators-tellurium. A full list of BioSimulators packages can be found here.
%
pip install biosimulators-tellurium
- Run the following from the command line, passing an OMEX filepath as -i and the output dir as -o
%
biosimulators-tellurium \
-i ~/experiments/my-file.omex \
-o ~/Desktop/results - Go to the directory and view your results.
%
cd ~/Desktop/results